swamp.parsers.phenixparser module

class PhenixParser(stdout, logger=None)

Bases: swamp.parsers.parser.Parser

A phenix.get_cc stdout parser

Parameters:

• stdout (str) – the stdout to be parsed (default None)
• logger (SwampLogger) – logging interface for the parser (default None)

Variables:

• overall_CC – the overall correlation coefficient parsed from stdout
• local_CC – the local correlation coefficient parsed from stdout

Example:

>>> from swamp.parsers import PhenixParser
>>> my_parser = PhenixParser('<stdout>')
>>> my_parser.parse()

parse()

Extract the figures of merit from stdout

summary

A summary of the figures of merit