swamp.parsers.phaserparser module

class PhaserParser(fname, stdout, logger=None)

Bases: swamp.parsers.parser.Parser

A Phaser output parser

Parameters:

• fname (str) – the file name to be parsed (default None)
• stdout (str) – the stdout to be parsed (default None)
• logger (SwampLogger) – logging interface for the parser (default None)

Variables:

• RFZ (str) – the RFZ as parsed from the fname
• TFZ (str) – the RFZ as parsed from the fname
• LLG (str) – the LLG as parsed from the fname
• eLLG (str) – the eLLG as parsed from the stdout
• VRMS (str) – the VRMS as parsed from the stdout

Example:

>>> from swamp.parsers import PhaserParser
>>> my_parser = PhaserParser('<fname>', '<stdout>')
>>> my_parser.parse()

parse()

Extract the figures of merit from fname and stdout

summary

A summary of the parsed figures of merit

class PhaserScores

Bases: enum.Enum

An enumerator that contains the figures of merit to be parsed from phaser logfile

LLG = 'LLG'

RFZ = 'RFZ'

TFZ = 'TFZ'