swamp.parsers.pdbtmxmlparser module

class PdbtmXmlParser(fname, logger=None)[source]

Bases: swamp.parsers.parser.Parser

Class to parse and store pdbtm data contained in xml format files

Parameters:
  • fname (str) – the file name to be parsed (default None)
  • logger (SwampLogger) – logging interface for the parser (default None)
Variables:

ss2_annotation (list) – List of named tuples containing secondary structure annotations found in the input file
Example: 
>>> from swamp.parsers import PdbtmXmlParser
>>> my_parser = PdbtmXmlParser('<fname>')
>>> my_parser.parse()
parse()[source]

Method to parse fname and store ss2 annotation

summary

Abstract property to store a summary of the parsed figures of merit (not in use)